OMICSDESKbioinformatics, delivered

Free QC report for your single-cell data

Upload a count matrix and get back per-cell distributions, data-driven filtering thresholds (median ± 3 MAD, not copied from a tutorial) and a list of things worth a second look. No account, no email required. Your file is deleted the moment the analysis finishes.

Runs on our own machines, typically 30 seconds to 3 minutes depending on size. Nothing is stored: the input is removed as soon as the report is generated, and the report itself expires after 7 days.

What you get

Per-cell distributions

Genes, UMIs and mitochondrial fraction per cell, with the suggested cut-offs drawn on top.

Thresholds that fit your data

Computed from your own distributions rather than the standard 200 / 2500 / 5% that fails on many tissues.

Warnings worth acting on

Missing mitochondrial annotation, undetected empty droplets, suspiciously shallow profiles, over-aggressive filtering.

→ Why fixed QC thresholds fail, and what to use instead